IE 6 and evilness

There seems to be an issue with IE6 and opening a new window with javascript affecting elements within the body tag.  Plenty of fixes out there, but all require to run it outside the body tag or wait until the elements are loaded.  I was able to do a workaround in our current system.  But, moving it to our new CMS — new issues.

I’m trying to figure out a better way to solve this issue when one has no control of the body tag….